E-selectin lectin with different glycomimetic ligands
Varga, N., Zihlmann, P., Preston, R.C., Jakob, R.P., Maier, T., Ernst, B.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
E-selectin | 280 | Homo sapiens | Mutation(s): 0  Gene Names: SELE, ELAM1 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P16581 (Homo sapiens) Go to UniProtKB:  P16581 | |||||
PHAROS:  P16581 GTEx:  ENSG00000007908  | |||||
Glycosylation | |||||
Glycosylation Sites: 7 | Go to GlyGen: P16581-1 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
C5H Query on C5H | J [auth A], S [auth B] | (2~{S})-3-cyclohexyl-2-[(2~{R},3~{S},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-3,5-bis(oxidanyl)-6-[(1~{R},2~{R})-2-[(2~{R},3~{S},4~{R},5~{S},6~{R})-3,4,5-tris(oxidanyl)-6-(trifluoromethyl)oxan-2-yl]oxycyclohexyl]oxy-oxan-4-yl]oxy-propanoic acid C27 H43 F3 O13 OYWZGUHJADSZQK-NGNDWVCUSA-N | |||
NAG Query on NAG | C [auth A] D [auth A] E [auth A] F [auth A] G [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
CA Query on CA | K [auth A], T [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 52.58 | α = 90 |
b = 71.04 | β = 93.73 |
c = 92.16 | γ = 90 |
Software Name | Purpose |
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BUSTER | refinement |
DIALS | data reduction |
Aimless | data scaling |
PHASER | phasing |